Is the new sequence the same using the settings of the others? In CS5 you can have diff settings per sequence.
Does it do the same thing with only two nested files? Maybe it’s one sequence in particular
Does it do the all transitions? Maybe its the transition type, maybe transition needs to be trimmed?
I’ve never had that occur to me. I use PPro CS3
Of course, the option remains to render out the sequences and then try again. (sort of defeats the feature though!)
